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ath1 microarrays  (Thermo Fisher)


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    Structured Review

    Thermo Fisher ath1 microarrays
    Ath1 Microarrays, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+microarray/pmc11696002-150-15-15
    Average 90 stars, based on 1 article reviews
    ath1 microarrays - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana
    Article Snippet: .. Using the corresponding locus identifiers (Atxgxxxxx) 227 genes were found to be represented on the Affymetrix ATH1 microarray represented by 216 probe sets (see Methods for details). ..

    Article Title: Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray
    Article Snippet: .. We show that two-cycle labelling is an acceptable method for generating samples for use with the Affymetrix ATH1 microarray in situations when enough material cannot reasonably be generated otherwise. ..

    Article Title: Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana
    Article Snippet: .. Two previous studies both investigated ~20 accessions with two different types of arrays: the Affymetrix ATH1 microarray [ ] and the Perlegen high density re-sequencing microarray [ ]. ..

    Article Title: Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray
    Article Snippet: .. We have shown here that two-cycle amplification is an acceptable method of producing transcriptomic data with the Affymetrix ATH1 microarray. ..

    Article Title: Solar ultraviolet radiation is necessary to enhance grapevine fruit ripening transcriptional and phenolic responses
    Article Snippet: .. Redundancy in Arabidopsis homologs was summarized on each analysed list and finally, enrichment in 55 UVR8-dependent homologous genes from the 11,673 Arabidopsis homologs represented in the grapevine NimbleGen microarray and present in the Affymetrix ATH1 microarray was studied for each cluster. .. Redundancy in Arabidopsis homologs was summarized on each analysed list and finally, enrichment in 55 UVR8-dependent homologous genes from the 11,673 Arabidopsis homologs represented in the grapevine NimbleGen microarray and present in the Affymetrix ATH1 microarray was studied for each cluster.

    Article Title: Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach
    Article Snippet: .. Exploratory analysis of Affymetrix ATH1 microarray data revealed that high frequency electromagnetic fields did not cause any major changes in gene activity ( ). .. Exploratory analysis of Affymetrix ATH1 microarray data revealed that high frequency electromagnetic fields did not cause any major changes in gene activity ( ).

    Article Title: Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein At GRP7
    Article Snippet: .. Therefore, differences in the mRNA complement of wt and At GRP7-ox plants were analyzed on the Affymetrix ATH1 microarray. ..

    Article Title: Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis
    Article Snippet: .. Subsequently, Wang et al [ ] used the Arabidopsis whole-genome Affymetrix ATH1 microarray containing 22,626 genes, to study the addition of the low level of nitrate to discover more N-responsive genes. ..

    Generated:

    Article Title: Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray
    Article Snippet: .. We show that two-cycle labelling is an acceptable method for generating samples for use with the Affymetrix ATH1 microarray in situations when enough material cannot reasonably be generated otherwise. ..

    Amplification:

    Article Title: Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray
    Article Snippet: .. We have shown here that two-cycle amplification is an acceptable method of producing transcriptomic data with the Affymetrix ATH1 microarray. ..

    Activity Assay:

    Article Title: Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach
    Article Snippet: .. Exploratory analysis of Affymetrix ATH1 microarray data revealed that high frequency electromagnetic fields did not cause any major changes in gene activity ( ). .. Exploratory analysis of Affymetrix ATH1 microarray data revealed that high frequency electromagnetic fields did not cause any major changes in gene activity ( ).



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    Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix <t>Arabidopsis</t> <t>ATH1</t> chip. The average normalized intensity for each <t>microarray</t> chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.
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    Thermo Fisher ath1 genechip microarrays
    Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix <t>Arabidopsis</t> <t>ATH1</t> chip. The average normalized intensity for each <t>microarray</t> chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.
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    Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix Arabidopsis ATH1 chip. The average normalized intensity for each microarray chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.

    Journal: International Journal of Molecular Sciences

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle

    doi: 10.3390/ijms251910850

    Figure Lengend Snippet: Expression profiles of genes encoding enzymes related to starch metabolism during the SD diurnal cycle. Genes are grouped by their biochemical activity: ( A ) starch synthases (SSs), ( B ) starch branching enzymes (BEs), ( C ) starch debranching enzymes (DBEs), ( D ) starch disproportionating enzymes (DPEs), ( E ) β-amylases (BAMs), ( F ) α-amylases (AAMs), ( G ) starch phosphorylases (PHSs), and ( H ) other enzymes related to starch metabolism. Leaves from WT plants cultivated under short day (SD) conditions, consisting of 8 h of light followed by 16 h of dark, were collected at various times throughout the 24-h cycle. RNA from these samples was then examined using the Affymetrix Arabidopsis ATH1 chip. The average normalized intensity for each microarray chip is 1. RNA was analyzed using GeneChip. The analysis was repeated in two independent experiments.

    Article Snippet: These data were collected from nearly 1000 chips representing 70 Arabidopsis Affymetrix ATH1 microarray experiments.

    Techniques: Expressing, Starch, Activity Assay, Microarray

    Expression correlations among genes within the starch metabolic network. Expression correlations among starch metabolic genes were evaluated by 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG . Pearson correlation values are color-coded. Vertical bars (labeled #1, group 1; #2, group 2; and #3, group 3) denote the three groups of genes with the highest correlations. Group 1 represents genes involved in starch degradation, Group 2 includes genes primarily associated with starch synthesis, and Group 3 comprises genes involved in both starch synthesis and carbohydrate metabolism. Details for each group are described in the text.

    Journal: International Journal of Molecular Sciences

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle

    doi: 10.3390/ijms251910850

    Figure Lengend Snippet: Expression correlations among genes within the starch metabolic network. Expression correlations among starch metabolic genes were evaluated by 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG . Pearson correlation values are color-coded. Vertical bars (labeled #1, group 1; #2, group 2; and #3, group 3) denote the three groups of genes with the highest correlations. Group 1 represents genes involved in starch degradation, Group 2 includes genes primarily associated with starch synthesis, and Group 3 comprises genes involved in both starch synthesis and carbohydrate metabolism. Details for each group are described in the text.

    Article Snippet: These data were collected from nearly 1000 chips representing 70 Arabidopsis Affymetrix ATH1 microarray experiments.

    Techniques: Expressing, Starch, Microarray, Labeling

    Gene expression correlated with the expression of the DPE2 gene. Gene-expression profiles of nine genes ( PTPKIS1 / SEX4 , GWD1 , ISA3 , GWD3 , ISA2 , PHS2 , PHS1 , AT1G06460, and AT2G31040) correlated to the expression profile of DPE2 (Pearson’s correlation coefficients of between 0.72 and 0.84). Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG ; the average expression level for each chip is 6.6.

    Journal: International Journal of Molecular Sciences

    Article Title: Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle

    doi: 10.3390/ijms251910850

    Figure Lengend Snippet: Gene expression correlated with the expression of the DPE2 gene. Gene-expression profiles of nine genes ( PTPKIS1 / SEX4 , GWD1 , ISA3 , GWD3 , ISA2 , PHS2 , PHS1 , AT1G06460, and AT2G31040) correlated to the expression profile of DPE2 (Pearson’s correlation coefficients of between 0.72 and 0.84). Gene expression was evaluated at the level of RNA accumulation from 963 Affymetrix ATH1 microarray chips representing 70 different Arabidopsis experiments and analyzed by MOG ; the average expression level for each chip is 6.6.

    Article Snippet: These data were collected from nearly 1000 chips representing 70 Arabidopsis Affymetrix ATH1 microarray experiments.

    Techniques: Expressing, Microarray